Basic concepts in evolution. Main evolutionary processes of biological sequences. Techniques for the study of evolutionary processes. Development and reconstruction of evolutionary models.
Graur and Li, Fundamentals of molecular evolution , Sinauer 2000
Michael Michael Lynch, The Origins Origins of Genome Architecture , Sinauer 2007
Learning Objectives
Knowledge acquired: The course will provide students with knowledge on the theoretical and technical concepts of molecular evolution.
Competence and skills acquired: the main theories at the basis of the study of molecular evolution will be illustrated. Moreover, the students will acquire the competences on the most advanced computational methodologies for the study of the evolution of biological systems. The potential applications of such an approach will be illustrated through the analysis of real-world case-studies.
Frequency of lectures:
The attendance of the lessons is strongly recommended.
Teaching tools: slides of the lessons; scientific publications.
Office hours: to be set according to the student needs.
Type of Assessment
Exam modality: oral exam
Course program
Introduction: definitio and fields of research/application. Basic building blocks of life. Theories on the origin of life. Micro-evolutionary processes: genes in populations, mutations, genetic drift, recombination. Evolutionary changes in nucleotide sequences. Gene duplication and genome expansion. Orthologs and paralogs. Architecture and evolution of the genome. Computational techniques in molecular evolution. Models and substitution rates. Molecular phylogeny. Distance-based and likelihood-based methods. Horizontal gene transfer and mobile elements. Techniques and approaches for the identification of horizontal gene transfer.